Program
EMBO workshop: The Immune System of Bacteria
April 08th-10th, 2025

 
Tuesday, April 8, 2025
Registration
08.00 am-09.00 am (GMT+1)
Welcome notes
09.00 am-09.20 am (GMT+1)
Invited Talk
09.20 am-09.50 am (GMT+1)
Chair: Rotem Sorek, Weizmann Institut of Science, Israel
1
09.20 am

Phages : a totally unexpected and fascinating Renaissance

Pascale Cossart
Institut Pasteur, Paris, France
Nucleic acids and antiphage defense - Part 1
09.50 am-10.40 am (GMT+1)
Chair: Rotem Sorek, Weizmann Institut of Science, Israel
2
09.50 am

Temperate phages enhance host fitness via RNA-guided flagellin regulation

Samuel Sternberg
Department of Biochemistry and Molecular Biophysics, Columbia University, New-York, United States
3
10.20 am

TIGR-Tas – A modular RNA-Guided Systems found in Prokaryotes and their Viruses

Guilhem Faure
Zhang lab, The Broad Institute of MIT and Harvard, Cambridge, United States
Coffee Break
10.40 am-11.20 am (GMT+1)
Nucleic acids and antiphage defense - Part 2
11.20 am-12.40 pm (GMT+1)
Chair: Anne Chevallereau, CNRS, France
4
11.20 am

Structure and Activation Mechanism of a Lamassu Phage Defence System

Stephan Gruber
Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland
5
11.40 am

Homopolymeric DNA synthesis by a defense-associated reverse transcriptase

Stephen Tang
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, United States
6
12.00 pm

Bacterial reverse transcriptase synthesizes long poly-A-rich single-stranded cDNA for anti-phage defense

Ning Jia
Southern University of Science and Technology, Shenzhen, China
7
12.20 pm

Retron Eco2 breaks tRNAs for anti-phage defense

Patrick Pausch
LSC-EMBL, Vilnius University, Vilnius, Lithuania
Lunch and Posters Session 1 - Part 1
12.40 pm-2.30 pm (GMT+1)
Diversity and conservation of antiviral immunity in bacteria and beyond
2.30 pm-5.20 pm (GMT+1)
Chair: David Burstein, Tel Aviv University, Israel
8
2.30 pm

How bacteria diversify their immune systems

Aude Bernheim
Molecular Diversity of Microbes Lab, Institut Pasteur, CNRS UMR3525, Université Paris-Cité, Paris, France
9
3.00 pm

DefensePredictor: A Machine Learning Model to Discover Novel Prokaryotic Immune Systems

Peter Deweirdt
Laub Lab, MIT, Cambridge, United States
10
3.20 pm

Integrons as biobanks of minimal defense systems

Eduardo Rocha
Institut Pasteur, Paris, France
0
3.50 pm

Coffee break


11
4.30 pm

Reprogrammable RNA-targeting CRISPR systems evolved from RNA toxin-antitoxins

Shai Zilberzwige Tal
The Broad Institute of MIT and Harvard, Cambridge, United States Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, United States
12
4.50 pm

Ancient origins of immune components in bacteria

Tanita Wein
Weizmann Institut of Science, Rehovot, Israel
Posters Session 1 - Part 2
5.20 pm-7.30 pm (GMT+1)
Welcome reception - Wine and Cheese
7.30 pm-9.30 pm (GMT+1)
Wednesday, April 9, 2025
Welcome coffee
08.30 am-09.00 am (GMT+1)
Nucleotides and antiphage defense - Part 1
09.00 am-10.20 am (GMT+1)
Chair: Jens Hör, Helmholtz Centre for Infection Research (HZI), Germany
13
09.00 am

An unexpected role for nucleotides in anti-phage defense

Philip Kranzusch
14
09.30 am

cGMP-dependent Pucsar antiphage defense systems

Dinshaw Patel
Structural Biology, Memorial Sloan-Kettering Cancer Center, New York, United States
15
09.50 am

TIR signaling activates caspase-like immunity in bacteria

Francois Rousset
CIRI, Lyon, France
Coffee Break
10.20 am-11.00 am (GMT+1)
Nucleotides and antiphage defense - Part 2
11.00 am-12.40 pm (GMT+1)
Chair: Kailey Slavik, The Rockefeller University, United States
16
11.00 am

How to trick a sponge without really trying: a lesson in anti-anti-anti-phage immunity

Benjamin Morehouse
UC Irvine, Irvine, United States
17
11.30 am

An inverse immune signaling pathway that safeguards bacterial defense

Erin Doherty
Jennifer Doudna, UC Berkeley, Berkeley, United States
18
11.50 am

Activating and inhibiting nucleotide signals regulate Clover anti-phage defense

Sonomi YAMAGUCHI
Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, United States Department of Microbiology, Harvard Medical School, Boston, United States
19
12.10 pm

Cyclic Nucleotide Defence Signalling: mechanistic underpinnings of varied regulatory strategies

Malcolm White
University of St Andrews, Scotland, United Kingdom
Lunch and Posters Session 2 - Part 1
12.40 pm-2.30 pm (GMT+1)
Antiphage systems in natural isolates
2.30 pm-3.50 pm (GMT+1)
Chair: Pedro Leão, Radboud University, The Netherlands
20
2.30 pm

Phage warfare: Understanding the importance of prophage-encoded anti-phage defence inPseudomonas aeruginosa

Stineke Van Houte
Exeter University, Exeter, United Kingdom
21
3.00 pm

Environmental and physiological factors regulate microbial immunity

Lucas Paoli
Molecular Diversity of Microbes lab, Institut Pasteur, Paris, France School of Life Sciences, EPFL, Lausanne, Switzerland
22
3.20 pm

Prophage-encoded antiphage defense systems in Salmonella

Sophie Helaine
Harvard Medical School, Boston, United States
Coffee Break
3.50 pm-4.30 pm (GMT+1)
Regulating antiphage defense
4.30 pm-6.10 pm (GMT+1)
Chair: Naama Aviram, Sloan Kettering Institute, United States
23
4.30 pm

Autoregulating nucleotidyltransferase toxins and phage defence

Timothy Blower
Department of Biosciences, Durham University, Stockton Road, Durham, United Kingdom New England Biolabs, 240 County Road, Ipswich, Ma, 01938, United States
24
5.00 pm

Mechanistic basis for protein conjugation in a diverged bacterial ubiquitination pathway

Kevin Corbett
University of California San Diego, La Jolla, United States
25
5.20 pm

Translation-dependent downregulation of Cas12a mRNA by an anti-CRISPR protein

Nicole Marino
Microbiology and Immunology, Bondy-Denomy Lab, University of California San Francisco, San Francisco, United States
26
5.50 pm

Multigenerational Proteolytic Inactivation of Restriction upon subtle genomic hypomethylation

Alexis Villani
University of California San Francisco, San Francisco, United States
Posters Session 2 - Part 2
6.10 pm-8.00 pm (GMT+1)
Thursday, April 10, 2025
Welcome coffee
08.30 am-09.00 am (GMT+1)
Sensing Phage infection
09.00 am-10.10 am (GMT+1)
Chair: Nathalie Bechon, Weizmann Institute of Science, Israel
27
09.00 am

How do defense systems sense phage infection?

Michael Laub
MIT & HHMI, Boston, United States
28
09.30 am

A bacterial TIR-based immune system senses viral capsids to initiate defense

Cameron Roberts
Laboratory of Bacteriology, Dr. Luciano Marraffini, The Rockefeller University, New York, United States
29
09.50 am

Gabija targets phages that antagonize RecBCD loading

Alex Hong
Microbiology and Immunology, Bondy-Denomy Lab, UC San Francisco, San Francisco, United States
Coffee Break
10.10 am-10.50 am (GMT+1)
Jumbo Phages
10.50 am-12.20 pm (GMT+1)
Chair: Jack Bravo, Institute of Science and Technology, Austria
30
10.50 am

Discovery of bacterial immune system family that specifically inhibits nucleus-forming Jumbo Phages

Yuping Li
Department of Microbiology and Immunology, University of California, San Francisco, Ca 94403, United States Biozentrum, University of Basel, Basel 4056, Switzerland
31
11.20 am

Single or married: analysis of Jumbo killer systemgene neighborhoods reveals new two-component and single-component defense systems

Kira Makarova
National Library of Medicine, National Institutes of Health, Maryland, United States
32
11.50 am

Bacterial dormancy as an antiviral defense

Alexander Harms
ETH Zürich, Switzerland, Zurich, Switzerland
Lunch
12.20 pm-2.00 pm (GMT+1)
Phages resistance to bacterial immunity
2.00 pm-4.30 pm (GMT+1)
Chair: Philip Kranzusch, Harvard Medical School, United States
33
2.00 pm

Phages use distinct strategies to overcome barriers to infection at the bacterial cell surface

Michele LeRoux
WUSTL, St Louis, United States
34
2.30 pm

Proteome-Scale Phosphorylation by Phage T7 Kinase Suppresses Host Immune Systems

Tara Bartolec
Molecular Systems Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
35
2.50 pm

The NAD+ battlefield: phages and bacteria in a molecular arms race

Ilya Osterman
Weizmann Institute of Science, Rehovot, Israel
36
3.10 pm

Interpretable machine learning reveals a diverse arsenal of anti-defenses in bacterial viruses

Anna Lopatina
University of Wien, Wien, Austria
0
3.30 pm

Coffee break


37
4.00 pm

Understanding and manipulating phage resistance to bacterial immunity

Rotem Sorek
Weizmann Institut of Science, Rehovot, Israel
Conference summary and poster prizes (sponsored by Eligo), announcement
4.30 pm-4.45 pm (GMT+1)
Visits of Orsay and Gala Diner
5.40 pm-10.00 pm (GMT+1)
After party in Paris
10.00 pm-02.00 am (GMT+1)
Friday, April 11, 2025
Optional Excursion in Paris - Cruise on the River Seine
10.00 am-3.00 pm (GMT+1)

 

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